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1

Computational Reconstruction of Multidomain Proteins Using Atomic Force Microscopy Data

Minh-Hieu Trinh, Michael Odorico, Michael E. Pique, Jean-Marie Teulon, Victoria A. Roberts, Lynn F. Ten Eyck, Elizabeth D. Getzoff, Pierre Parot, Shu-wen W. Chen, Jean-Luc Pellequer

Journal:

Year:

2012

Language:

english

File:

PDF, 953 KB

english, 2012

2

Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments

Matthew Hotchko, Ganesh S. Anand, Elizabeth A. Komives, Lynn F. Ten Eyck

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 388 KB

english, 2006

3

Crystal structures of the myristylated catalytic subunit of cAMP-dependent protein kinase reveal open and closed conformations

Jianhua Zheng, Daniel R. Knighton, Susan S. Taylor, Nguyen-Huu Xuong, Janusz M. Sowadski, Lynn F. Ten Eyck

Journal:

Protein Science

Year:

1993

Language:

english

File:

PDF, 10.00 MB

english, 1993

4

Interfaces in Molecular Docking

Mitchell, Julie C., Shahbaz, Sharokina, Ten Eyck, Lynn F.

Journal:

Molecular Simulation

Year:

2004

Language:

english

File:

PDF, 445 KB

english, 2004

5

A Generalized Allosteric Mechanism for cis-Regulated Cyclic Nucleotide Binding Domains

Kornev, Alexandr P., Taylor, Susan S., Ten Eyck, Lynn F., Ranganathan, Rama

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 619 KB

english, 2008

6

600 ps Molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase

Igor Tsigelny, Jerry P. Greenberg, Sarah Cox, William L. Nichols, Susan S. Taylor, Lynn F. Ten Eyck

Journal:

Year:

1999

Language:

english

File:

PDF, 328 KB

english, 1999

7

Conserved spatial patterns across the protein kinase family

Lynn F. Ten Eyck, Susan S. Taylor, Alexandr P. Kornev

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2008

Language:

english

File:

PDF, 790 KB

english, 2008

8

Progress in computation and amide hydrogen exchange for prediction of protein–protein complexes

Dennis Law, Matthew Hotchko, Lynn Ten Eyck

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 238 KB

english, 2005

9

[Methods in Enzymology] Diffraction Methods for Biological Macromolecules Part B Volume 115 || Fast Fourier transform calculation of electron density maps

Ten Eyck, Lynn F.

Year:

1985

Language:

english

File:

PDF, 653 KB

english, 1985

10

Rapid Estimation of Solvation Energy for Simulations of Protein−Protein Association

Cerutti, David S., Ten Eyck, Lynn F., McCammon, J. Andrew

Journal:

Journal of Chemical Theory and Computation

Year:

2005

Language:

english

File:

PDF, 194 KB

english, 2005

11

Protein structural alignment for detection of maximally conserved regions

Vladimir Kotlovyi, William Lee Nichols, Lynn F. Ten Eyck

Journal:

Biophysical Chemistry

Year:

2003

Language:

english

File:

PDF, 1.20 MB

english, 2003

12

Comparative surface geometry of the protein kinase family

Elaine E. Thompson, Alexandr P. Kornev, Natarajan Kannan, Choel Kim, Lynn F. Ten Eyck, Susan S. Taylor

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 933 KB

english, 2009

13

Finding needles in haystacks: Reranking DOT results by using shape complementarity, cluster analysis, and biological information

Dennis S. Law, Lynn F. Ten Eyck, Omer Katzenelson, Igor Tsigelny, Victoria A. Roberts, Mike E. Pique, Julie C. Mitchell

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 446 KB

english, 2003

14

Catalytic Subunit of Cyclic AMP-Dependent Protein Kinase: Structure and Dynamics of the Active Site Cleft

Susan S Taylor, Elzbieta Radzio-Andzelm, Madhusudan, Xiaodong Cheng, Lynn Ten Eyck, Narendra Narayana

Journal:

Pharmacology & Therapeutics

Year:

1999

Language:

english

File:

PDF, 815 KB

english, 1999

15

cAMP-dependent protein kinase and the protein kinase family

Taylor, Susan S., Knighton, Daniel R., Zheng, Jianhua, Eyck, Lynn F. Ten, Sowadski, Janusz M.

Journal:

Faraday Discussions

Year:

1992

Language:

english

File:

PDF, 1.87 MB

english, 1992

16

Prediction-based threading of the hMSH2 DNA mismatch repair protein

De las alas, Maida M., de Bruin, Robertus A. M., Eyck, Lynn Ten, Los, Gerrit, Howell, Stephen B.

Journal:

The FASEB Journal

Year:

1998

Language:

english

File:

PDF, 662 KB

english, 1998

17

Rapid atomic density methods for molecular shape characterization

Julie C. Mitchell, Rex Kerr, Lynn F. Ten Eyck

Journal:

Journal of Molecular Graphics and Modelling

Year:

2001

Language:

english

File:

PDF, 8.17 MB

english, 2001

18

Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with magnesium-ATP and peptide inhibitor

Zheng, Jianhua, Knighton, Daniel R., Ten Eyck, Lynn F., Karlsson, Rolf, Xuong, N., Taylor, Susan S., Sowadski, Janusz M.

Journal:

Year:

1993

Language:

english

File:

PDF, 2.82 MB

english, 1993

19

Practical Protein Crystallography || Foreword to the Second Edition

Ten Eyck, Lynn F.

Year:

1999

Language:

english

File:

PDF, 98 KB

english, 1999

20

Predicting protein-DNA interactions by full search computational docking

Roberts, Victoria A., Pique, Michael E., Ten Eyck, Lynn F., Li, Sheng

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 2.48 MB

english, 2013

21

Structural Features that Specify Tyrosine Kinase Activity Deduced from Homology Modeling of the Epidermal Growth Factor Receptor

Daniel R. Knighton, Deborah L. Cadena, Jianhua Zheng, Lynn F. Ten Eyck, Susan S. Taylor, Janusz M. Sowadski and Gordon N. Gill

Journal:

Proceedings of the National Academy of Sciences

Year:

1993

Language:

english

File:

PDF, 1.19 MB

english, 1993

22

Functional and structural characterization of a thermostable acetyl esterase from Thermotoga maritima

Mark Levisson, Gye Won Han, Marc C. Deller, Qingping Xu, Peter Biely, Sjon Hendriks, Lynn F. Ten Eyck, Claus Flensburg, Pietro Roversi, Mitchell D. Miller, Daniel McMullan, Frank von Delft, Andreas Kr

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.57 MB

english, 2012

23

Crystal Structures of RIα Subunit of Cyclic Adenosine 5‘-Monophosphate (cAMP)-Dependent Protein Kinase Complexed with ( R p )-Adenosine 3‘,5‘-Cyclic Monophosphothioate and ( S p )-Adenosine 3‘,5‘-Cyclic Monophosphothioate, the Phosphothioate Analogues of cAMP †,‡

Wu, Jian, Jones, John M., Xuong, Nguyen-Huu, Eyck, Lynn F. Ten, Taylor, Susan S.

Journal:

Year:

2004

Language:

english

File:

PDF, 468 KB

english, 2004

24

Crystal structure of the E230Q mutant of cAMP-dependent protein kinase reveals an unexpected apoenzyme conformation and an extended N-terminal A helix

Jian Wu, Jie Yang, Natarajan Kannan, Madhusudan, Nguyen-Huu Xuong, Lynn F. Ten Eyck, Susan S. Taylor

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 675 KB

english, 2005

25

[ACM Press the third annual international conference - Lyon, France (1999.04.11-1999.04.14)] Proceedings of the third annual international conference on Computational molecular biology - RECOMB '99 - Coupled optimization in protein docking

Mitchell, Julie C., Rosen, J. Ben, Phillips, Andrew T., Ten Eyck, Lynn F.

Year:

1999

Language:

english

File:

PDF, 687 KB

english, 1999

26

A Conserved Helix Motif Complements the Protein Kinase Core

Michel Veron, Elzbieta Radzio-Andzelm, Igor Tsigelny, Lynn F. Ten Eyck and Susan S. Taylor

Journal:

Proceedings of the National Academy of Sciences

Year:

1993

Language:

english

File:

PDF, 1.67 MB

english, 1993

27

[Methods in Enzymology] Macromolecular Crystallography, Part D Volume 374 || Full Matrix Refinement as a Tool to Discover the Quality of a Refined Structure

Ten Eyck, Lynn F.

Year:

2003

Language:

english

File:

PDF, 987 KB

english, 2003

28

Dynamic Features of cAMP-dependent Protein Kinase Revealed by Apoenzyme Crystal Structure

Pearl Akamine, Madhusudan, Jian Wu, Nguyen-Huu Xuong, Lynn F.Ten Eyck, Susan S Taylor

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.86 MB

english, 2003

29

Crystal Structure of the Potent Natural Product Inhibitor Balanol in Complex with the Catalytic Subunit of cAMP-Dependent Protein Kinase †

Narayana, Narendra, Diller, Thomas C., Koide, Kazunori, Bunnage, Mark E., Nicolaou, K. C., Brunton, Laurence L., Xuong, Nguyen-Huu, Ten Eyck, Lynn F., Taylor, Susan S.

Journal:

Year:

1999

Language:

english

File:

PDF, 169 KB

english, 1999

30

CAPRI: A Critical Assessment of PRedicted Interactions

Joël Janin, Kim Henrick, John Moult, Lynn Ten Eyck, Michael J. E. Sternberg, Sandor Vajda, Ilya Vakser, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 198 KB

english, 2003

31

Gro-ing pains

Ten Eyck, Lynn F.

Journal:

Natural Structural Biology

Year:

1995

File:

PDF, 525 KB

1995

32

A binary complex of the catalytic subunit of cAMP-dependent protein kinase and adenosine further defines conformational flexibility

Narendra Narayana, Sarah Cox, Nguyen-huu Xuong, Lynn F Ten Eyck, Susan S Taylor

Journal:

Year:

1997

Language:

english

File:

PDF, 1.05 MB

english, 1997

33

Conformation-invariant structures of the α1β1 human hemoglobin dimer

William L. Nichols, Bruno H. Zimm, Lynn F. Ten Eyck

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 554 KB

english, 1997

34

cAMP-dependent protein kinase: Crystallographic insights into substrate recognition and phosphotransfer

Madhusudan, Elzbieta A. Trafny, Nguyen-Huu Xuong, Joseph A. Adams, Lynn F.Ten Eyck, Susan S. Taylor, Janusz M. Sowadski

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 6.92 MB

english, 1994

35

Novel Integrative Protocol for Reconstructing Large Macromolecules using Atomic Force Microscopy Data and Computational Docking

Pellequer, Jean-Luc, Trinh, Minh-Hieu, Odorico, Michael, Pique, Michael E., Teulon, Jean-Marie, Roberts, Victoria A., Ten Eyck, Lynn F., Getzoff, Elizabeth D., Parot, Pierre, Chen, Shu-wen W.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 67 KB

english, 2012

36

Signalling Mechanisms Involved in Control of Cell Growth || cAMP-Dependent Protein Kinase Defines a Family of Enzymes

Susan S. Taylor, Jianhua Zheng, Elzbieta Radzioandzelm, Daniel R. Knighton, Lynn F. Ten Eyck, Janusz M. Sowadski, Friedrich W. Herberg and Wes M. Yonemoto

Journal:

Philosophical Transactions Biological Sciences

Year:

1993

Language:

english

File:

PDF, 1.43 MB

english, 1993

37

Vaccinia Virus Immunomodulator A46: A Lipid and Protein-Binding Scaffold for Sequestering Host TIR-Domain Proteins

Fedosyuk, Sofiya, Bezerra, Gustavo Arruda, Radakovics, Katharina, Smith, Terry K., Sammito, Massimo, Bobik, Nina, Round, Adam, Ten Eyck, Lynn F., Djinović-Carugo, Kristina, Usón, Isabel, Skern, Tim, F

Journal:

Year:

2016

Language:

english

File:

PDF, 3.17 MB

english, 2016

38

Rigid domains in proteins: An algorithmic approach to their identification

William L. Nichols, George D. Rose, Lynn F. Ten Eyck, Bruno H. Zimm

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 998 KB

english, 1995

39

Catalytic subunit of cAMP-dependent protein kinase: Electrostatic features and peptide recognition

Igor Tsigelny, Bruce D. Grant, Susan S. Taylor, Lynn F. Ten Eyck

Journal:

Year:

1996

Language:

english

File:

PDF, 1.09 MB

english, 1996

40

R-subunit Isoform Specificity in Protein Kinase A: Distinct Features of Protein Interfaces in PKA Types I and II by Amide H/2H Exchange Mass Spectrometry

Ganesh S. Anand, Matthew Hotchko, Simon H.J. Brown, Lynn F. Ten Eyck, Elizabeth A. Komives, Susan S. Taylor

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

41

Identification and Characterization of EX1 Kinetics in H/D Exchange Mass Spectrometry by Peak Width Analysis

David D. Weis, Thomas E. Wales, John R. Engen, Matthew Hotchko, Lynn F. Ten Eyck

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2006

Language:

english

File:

PDF, 1.07 MB

english, 2006

42

The protein kinase resource

Christopher M. Smith, Ilya N. Shindyalov, Stella Veretnik, Michael Gribskov, Susan S. Taylor, Lynn F. Ten Eyck, Philip E. Bourne

Journal:

Trends in Biochemical Sciences

Year:

1997

Language:

english

File:

PDF, 464 KB

english, 1997

43

Crystal Structure of a cAMP-dependent Protein Kinase Mutant at 1.26 Å: New Insights into the Catalytic Mechanism

Jie Yang, Lynn F. Ten Eyck, Nguyen-Huu Xuong, Susan S. Taylor

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.99 MB

english, 2004

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